[Bioperl-l] Bio::DB::SwissProt Error

Marc Weimer m.weimer at dkfz-heidelberg.de
Thu Oct 5 09:35:06 EDT 2006


Works fine with 1.5.2

Thanks,

Marc


> Marc Weimer wrote:
> [snip]
> >   my $db_obj = new Bio::DB::SwissProt(-verbose=>1);
> > 
> >   my $seq_obj = $db_obj->get_Seq_by_acc('P43780');
> [snip]
> > using Bioperl 1.4-1 I get the error message
> [snip]
> >   ------------- EXCEPTION: Bio::Root::Exception -------------
> >   MSG: swissprot stream with no ID. Not swissprot in my book
> [snip]
> > Any suggestions?
> 
> It works with the latest Bioperl. I'm not sure if 1.5.1 works (the most 
> recent official release), but 1.5.2 does 
> (http://bioperl.org/wiki/Release_1.5.2), as does a checkout from CVS 
> (http://bioperl.org/wiki/Getting_BioPerl#CVS).
-- 
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Dr. Marc Weimer
German Cancer Research Center
Central Unit Biostatistics
Im Neuenheimer Feld 280
D-69120 Heidelberg
Phone: +49 (0) 6221/42-2387
Fax: +49 (0) 6221/42-2397

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