[Bioperl-l] need help urgently

Sean Davis sdavis2 at mail.nih.gov
Thu Oct 12 06:40:12 EDT 2006


On Thursday 12 October 2006 02:03, neeti somaiya wrote:
> We are using BioPerl to parse a BLAST output file, and then we want to load
> full alignments into a CLOB column in one of our database tables. We are
> trying to use sql loader for the same. Anyone has an idea how we can go
> about it?
> We have tried loading sequences into CLOB columns using sql loader, and
> that works fine, but the same syntax when used for loading alignments, is
> not working.

Neeti,

You'll need to be a bit more specific about what you are doing.  Can you post 
the code you are using and error messages?  Also, what is "sql loader"?  And 
what database are you trying to use?

Sean


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