[Bioperl-l] Should Bio::Tools::BPlite be deprecated?

Brian Osborne bosborne11 at verizon.net
Mon Oct 16 14:59:38 EDT 2006


Sendu,

OK. I _think_ this change shouldn't affect id_parser() but I will test this
in BlastIndex.t. The id_parser() method is relevant to all these Index*
modules - don't know how much it's used but it certainly is nice to have it
available.

Brian O.


On 10/16/06 2:51 PM, "Sendu Bala" <bix at sendu.me.uk> wrote:

> Brian Osborne wrote:
>> Sendu,
>> 
>> I just made a commit that makes Bio::Index::Blast use SearchIO instead of
>> BPlite.
> 
> I was concerned about the whole id_parser thing. Did you determine that
> your change still allows for id_parser to be used and have the intended
> effect, or that id_parser is in someway meaningless and should be
> removed as a method?




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