[Bioperl-l] Bioperl 1.5.2 RC2

Sendu Bala bix at sendu.me.uk
Wed Oct 18 09:16:24 EDT 2006


Chris Fields wrote:
> On Oct 17, 2006, at 6:49 PM, Paul Boutros wrote:
> 
>> Hi Chris,
>>
>> Yup, that's it.  I installed XML::SAX::ExpatXS (make test output
>> below).  Should there be a note somewhere in the INSTALL docs saying
>> basically what you just wrote?  Or maybe it's already there somewhere
>> and I missed it.
> 
> The INSTALL docs should have this, yes.  I'll double-check though.
> 
> Pretty much anything that plugs into XML::SAX except XML::SAX::Expat  
> works (XML::LibXML also works, I found).
> 
>> Also, I'd propose changing BioDBSeqFeature_mysql.t so that it checks
>> if DBD::mysql can be loaded,
[snip]
> It should check this when using 'perl Makefile.PL', since the tests  
> are only set up if MySQL is present (so you would assume that it  
> checks for DBD::mysql).  I'll look into it.

This looks like a booboo on my part. I left t/BioDBSeqFeature_mysql.t in 
my t directory when I packed it up for release.

I'm tweaking Makefile.PL right now in any case; there are a few errors 
and t/BioDBSeqFeature_mysql.t et al. don't get deleted in a make clean.


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