[Bioperl-l] Bioperl 1.5.2 RC2
bix at sendu.me.uk
Wed Oct 18 09:16:24 EDT 2006
Chris Fields wrote:
> On Oct 17, 2006, at 6:49 PM, Paul Boutros wrote:
>> Hi Chris,
>> Yup, that's it. I installed XML::SAX::ExpatXS (make test output
>> below). Should there be a note somewhere in the INSTALL docs saying
>> basically what you just wrote? Or maybe it's already there somewhere
>> and I missed it.
> The INSTALL docs should have this, yes. I'll double-check though.
> Pretty much anything that plugs into XML::SAX except XML::SAX::Expat
> works (XML::LibXML also works, I found).
>> Also, I'd propose changing BioDBSeqFeature_mysql.t so that it checks
>> if DBD::mysql can be loaded,
> It should check this when using 'perl Makefile.PL', since the tests
> are only set up if MySQL is present (so you would assume that it
> checks for DBD::mysql). I'll look into it.
This looks like a booboo on my part. I left t/BioDBSeqFeature_mysql.t in
my t directory when I packed it up for release.
I'm tweaking Makefile.PL right now in any case; there are a few errors
and t/BioDBSeqFeature_mysql.t et al. don't get deleted in a make clean.
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