[Bioperl-l] bioperl-run t/EMBOSS.t

Nathan S. Haigh n.haigh at sheffield.ac.uk
Thu Oct 19 11:37:31 EDT 2006


Thanks for committing that change Brian. Now the tests proceed from this
point, I get the following error:

------------- EXCEPTION: Bio::Root::NotImplemented -------------
MSG: Abstract method "Bio::Tools::Run::WrapperBase::program_dir" is not
implemented by package Bio::Tools::Run::EMBOSSApplication.
This is not your fault - author of Bio::Tools::Run::EMBOSSApplication
should be blamed!

STACK: Error::throw
STACK: Bio::Root::Root::throw
/home/bo1nsh/cvswc/bioperl-1-5-2/Bio/Root/Root.pm:350
STACK: Bio::Root::RootI::throw_not_implemented
/home/bo1nsh/cvswc/bioperl-1-5-2/Bio/Root/RootI.pm:522
STACK: Bio::Tools::Run::WrapperBase::program_dir
/home/bo1nsh/cvswc/bioperl-1-5-2/Bio/Tools/Run/WrapperBase.pm:346
STACK: Bio::Tools::Run::WrapperBase::program_path
/home/bo1nsh/cvswc/bioperl-1-5-2/Bio/Tools/Run/WrapperBase.pm:327
STACK: Bio::Tools::Run::WrapperBase::executable
/home/bo1nsh/cvswc/bioperl-1-5-2/Bio/Tools/Run/WrapperBase.pm:297
STACK: t/EMBOSS.t:58
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