[Bioperl-l] Bioperl 1.5.2 RC2

Chris Fields cjfields at uiuc.edu
Thu Oct 19 11:31:45 EDT 2006


> > As a followup in this, I tried bioperl-network and had similar failed
> tests
> > with Graph 0.79 (the only PPM available from ActiveState).  However, the
> > INSTALL docs state that Graph 0.80 is needed, and the test run gave
> several
> > warnings about not having Graph 0.80 installed.
> >
> > I made a PPM of Graph 0.80, installed, retried bioperl-network tests,
> and
> > everything passed.  Maybe we need to have a Graph PPM available for
> those
> > who want bioperl-network?
> >
> > As for bioperl-run, all tests passed from a new CVS checkout even though
> I
> > have none of the programs installed, so they seem to skip properly.  The
> > test run also printed warnings when a program wasn't available or
> installed.
> >
> >
> > Chris
> >
> >
> If you can pop the Graph 0.80 ppd files in DIST/RC/ i'll make
> modifications to integrate them into the package.xml file for PPM4
> clients.
> 
> Nath

Will do.  Should these be forwarded to Mauricio?

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign



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