[Bioperl-l] bioperl-run executable

Chris Fields cjfields at uiuc.edu
Thu Oct 19 14:35:08 EDT 2006


I think a lot of the bioperl-run modules use Bio::Tools::Run::WrapperBase
but I'm not sure.  I haven't used them very much myself but plan on making
wrappers at some point soon for some programs I use.

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 

> -----Original Message-----
> From: Nathan Haigh [mailto:N.Haigh at sheffield.ac.uk]
> Sent: Thursday, October 19, 2006 1:15 PM
> To: Chris Fields
> Cc: 'bioperl-l'
> Subject: bioperl-run executable
> 
> I have a few questions about How bioperl-run modules.
> 
> 1) How do modules define what the name of the executable is that it uses?
> 2) Is there a way to test what this is?
> 3) Does $factory->executable return this or does it only return the name
> if it successfully found it?
> 
> Thanks
> Nath



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