[Bioperl-l] bioperl-run executable

Jason Stajich jason at bioperl.org
Thu Oct 19 14:48:28 EDT 2006


program_name()
  Should return the name of the program

executable()
  Is a function that you don't have to mess with that tries to find  
the executable named  program_name() based on your PATH.


-jason
On Oct 19, 2006, at 11:14 AM, Nathan Haigh wrote:

> I have a few questions about How bioperl-run modules.
>
> 1) How do modules define what the name of the executable is that it  
> uses?
> 2) Is there a way to test what this is?
> 3) Does $factory->executable return this or does it only return the  
> name if it successfully found it?
>
> Thanks
> Nath
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--
Jason Stajich, PhD
Miller Research Fellow
University of California
Dept of Plant and Microbial Biology
321 Koshland Hall #3102
Berkeley, CA 94720-3102
lab: 510.642.8441
http://pmb.berkeley.edu/~taylor/people/js.html




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