[Bioperl-l] Error retrieving sequence from BioSQL

Chris Fields cjfields at uiuc.edu
Fri Oct 20 16:32:32 EDT 2006



Seth, 

Did you work out the problem here?  There was a recent CVS update to OBDA
tests (16obda.t) that fixed similar problems on Mac OS X.  Old OBDA tests
apparently left data from tests in the database, which caused problems with
repeated test runs.

Chris

> > -----Original Message-----
> > From: bioperl-l-bounces <at> lists.open-bio.org [mailto:bioperl-l-
> > bounces <at> lists.open-bio.org] On Behalf Of Seth Johnson
> > Sent: Saturday, September 30, 2006 6:35 PM
> > To: Hilmar Lapp
> > Cc: Chris Fields; Bioperl List
> > Subject: Re: [Bioperl-l] Error retrieving sequence from BioSQL
> >
> > Here're complete test details:
> > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>
> ...
>
> > FAILED tests 10-12
> >     Failed 3/12 tests, 75.00% okay
> > Failed Test     Stat Wstat Total Fail  Failed  List of Failed
> >
> --------------------------------------------------------------------------
> > -----
> > t\02species.t                 65    2   3.08%  63 65
> > t\03simpleseq.t    1   256    59  106 179.66%  7-59
> > t\04swiss.t                   52   14  26.92%  25 27-34 38-42
> > t\12ontology.t     2   512   738 1471 199.32%  3-738
> > t\16obda.t                    12    3  25.00%  10-12
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> > Bioperl-l <at> lists.open-bio.org
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>
>

-- 
Best Regards,

Seth Johnson
Senior Bioinformatics Associate

Ph: (202) 470-0900
Fx: (775) 251-0358

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 




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