[Bioperl-l] Lagan environment variable

Nathan S. Haigh n.haigh at sheffield.ac.uk
Wed Oct 25 09:07:47 EDT 2006

Sendu Bala wrote:
> Notification to say I'm changing the environmental variable that 
> Bio::Tools::Run::Alignment::Lagan expects to define the location of the 
> lagan executables from LAGANDIR to LAGAN_DIR, since the latter is the 
> default variable that the lagan installation and scripts themselves look 
> for.
> I hope this isn't too much of a burden, but it seems like the sensible 
> approach to getting Bio::Tools::Run::Alignment::Lagan to actually work.
> Thank you,
> Sendu.
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Woudn't it make more sense to change the test? That is what I've just
done for t/Genscan.t

It seemed to fit in with the ENV variable syntax that other modules in
Bioperl-run used.


> A: Yes.
>> Q: Are you sure?
>>> A: Because it reverses the logical flow of conversation.
>>>> Q: Why is top posting frowned upon?
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