[Bioperl-l] Bio::Restriction::Enzyme

Nathan Haigh n.haigh at sheffield.ac.uk
Thu Oct 26 12:49:48 EDT 2006


Brian Osborne wrote:
> Nathan,
>
> Perhaps because most restriction sites are palindromes. Anyway, I added
> tests for palindromic() and is_palindromic() where the site is not a
> palindrome, these tests pass (t/RestrictionAnalyis.t).
>
> Brian O.
>
>
> On 10/26/06 12:13 PM, "Nathan Haigh" <n.haigh at sheffield.ac.uk> wrote:
>
>   
>> I'm in the middle of writing some code that uses
>> Bio::Restriction::Analysis and Bio::Restriction::Enzyme. I'm using
>> Bioperl from HEAD.
>>
>> I seem to find that $enzyme->is_palindromic always seems to return true.
>> Can anyone verify this? If needs be, I can send some code.
>>
>> Thanks
>> Nathan
>> _______________________________________________
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>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>     
>
>
>   
Ok, thanks - nice to know :-)


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