[Bioperl-l] Rfam/Pfam annotations and SimpleAlign

Chris Fields cjfields at uiuc.edu
Fri Oct 27 21:57:58 EDT 2006


On Oct 27, 2006, at 3:23 PM, Hilmar Lapp wrote:

> You could make SimpleAlign be a Bio::AnnotationHolderI. (I suppose
> this is what you meant by the 'various Bio::Seq Annotation methods'
> too.)
>
> Just to make sure I'm not misunderstanding, I suppose the annotation
> pertains to the entire alignment?
>
> 	-hilmar

BTW, was that supposed to be Bio::AnnotatableI, or  
Bio::AnnotationHolderI?  The latter isn't present in CVS HEAD.

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign





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