[Bioperl-l] catfile and catdir

Albert Vilella avilella at gmail.com
Tue Oct 31 08:54:39 EST 2006


Hi,

I was testing the bioperl-run/t/PAML.t and stumbled upon this a
catdir/catfile error:

Can't locate object method "catdir" via package "Bio::Root::IO" at
/home/avilella/src/bioperl-run/Bio/Tools/Run/Phylo/PAML/Yn00.pm line
113.
BEGIN failed--compilation aborted at
/home/avilella/src/bioperl-run/Bio/Tools/Run/Phylo/PAML/Yn00.pm line
143.
Compilation failed in require at t/PAML.t line 64.
BEGIN failed--compilation aborted at t/PAML.t line 64.

Should be be using File::Spec for catdir and catfile instead of Root::IO?

Cheers,

    Albert.


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