[Bioperl-l] catfile and catdir

Jason Stajich jason at bioperl.org
Tue Oct 31 12:09:26 EST 2006


Yep.  Unless we want this to also exist in Root::IO and delegate to  
File::Spec.

-jason
On Oct 31, 2006, at 5:54 AM, Albert Vilella wrote:

> Hi,
>
> I was testing the bioperl-run/t/PAML.t and stumbled upon this a
> catdir/catfile error:
>
> Can't locate object method "catdir" via package "Bio::Root::IO" at
> /home/avilella/src/bioperl-run/Bio/Tools/Run/Phylo/PAML/Yn00.pm line
> 113.
> BEGIN failed--compilation aborted at
> /home/avilella/src/bioperl-run/Bio/Tools/Run/Phylo/PAML/Yn00.pm line
> 143.
> Compilation failed in require at t/PAML.t line 64.
> BEGIN failed--compilation aborted at t/PAML.t line 64.
>
> Should be be using File::Spec for catdir and catfile instead of  
> Root::IO?
>
> Cheers,
>
>     Albert.
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--
Jason Stajich, PhD
Miller Research Fellow
University of California
Dept of Plant and Microbial Biology
321 Koshland Hall #3102
Berkeley, CA 94720-3102
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