[Bioperl-l] NEED HELP URGENTLY

Chris Fields cjfields at uiuc.edu
Fri Sep 1 14:23:03 EDT 2006


Yes, but the older SearchIO may not parse more current BLAST output (like
2.2.11).  You're usually safe with XML regardless of BLAST version, though:
it's the most stable.  

Interesting that v 1.2.3 works, though, so I'll have to investigate what
changed in between then and now.

Chris

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Adam Woolfe
> Sent: Friday, September 01, 2006 11:25 AM
> Cc: neeti somaiya; bioperl-l
> Subject: Re: [Bioperl-l] NEED HELP URGENTLY
> 
> If you can face using SearchIO in bioperl-1.2.3 that sorts the output
> whereas the later versions dont. not sure why!
> 
> Adam
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