[Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails
osborne1 at optonline.net
Sat Sep 2 16:17:34 EDT 2006
Bug, presumably in SeqIO/swiss.pm. Can you send me a small file with such a
On 9/1/06 6:11 AM, "Daniel Lang" <daniel.lang at biologie.uni-freiburg.de>
> when using Bio::Registry (bioperl-live) to fetch uniprot entries from
> local indexed uniprot *.dats, I had to realize that several entries
> could not be retrieved despite the fact that they are present in the
> files! A closer look reveals that they are of status PRELIMINARY:
> uniprot_trembl.dat:ID Q16EZ1_AEDAE PRELIMINARY; PRT; 222 AA.
> I don't "grep" PRELIMINARY anywhere in my cvs checkout..
> I also can't retrieve the sequences from the online database defined as
> Is this a bug or a feature? If its a feature, how can I bypass it?
> Thanks in advance,
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