[Bioperl-l] Entrezgene.pm $uncaptured data
koski at cenix-bioscience.com
Wed Sep 6 08:38:33 EDT 2006
I'm curious about the $uncaptured data returned from the entrezgene parser. I
can't seem to find any info on it. The $gene and $genestructure data is
straightforward (see below) but can someone please tell me how the
$uncaptured data is structured? I'm trying to pull out Conserved Domain
information and I'm pretty sure it's contained in the $uncaptured data.
Below is taken from the POD description:
my $seqio = Bio::SeqIO->new(-format => 'entrezgene',
-file => $file,
-debug => 'on' );
my ($gene,$genestructure,$uncaptured) = $seqio->next_seq;
The $genestructure is a Bio::Cluster::SequenceFamily object. It
contains all Refseqs and the genomic contigs that are associated with
the particular gene.
....what object does $uncaptured refer to? If any?
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