[Bioperl-l] Entrezgene.pm $uncaptured data

Liisa Koski koski at cenix-bioscience.com
Wed Sep 6 08:38:33 EDT 2006


Hi,
I'm curious about the $uncaptured data returned from the entrezgene parser. I 
can't seem to find any info on it. The $gene and $genestructure data is 
straightforward (see below) but can someone please tell me how the 
$uncaptured data is structured? I'm trying to pull out Conserved Domain 
information and I'm pretty sure it's contained in the $uncaptured data.

Thanks,
Liisa

Below is taken from the POD description:

   my $seqio = Bio::SeqIO->new(-format => 'entrezgene',
                               -file => $file,
                               -debug => 'on' );
   my ($gene,$genestructure,$uncaptured) = $seqio->next_seq;

The $genestructure is a Bio::Cluster::SequenceFamily object. It
contains all Refseqs and the genomic contigs that are associated with
the particular gene. 


....what object does $uncaptured refer to? If any?



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