[Bioperl-l] Cvs update tests fail

Ryan Golhar golharam at umdnj.edu
Thu Sep 7 15:54:50 EDT 2006


So I've updated my installation of bioperl from cvs using 'cvs update'.
I reran 'perl Makefile.PL' followed by 'make; make test'.

I see the following errors from 'make test':

t/BioDBSeqFeature............Can't locate Bio/DB/SeqFeature/Store.pm in
@INC (@INC contains: /users/golharam/cvswork/bioperl-live/ . ..
./blib/lib t /users/golharam/bioperl/bioperl-live/blib/lib
/users/golharam/bioperl/bioperl-live/blib/arch
/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl) at
t/BioDBSeqFeature.t line 30.
BEGIN failed--compilation aborted at t/BioDBSeqFeature.t line 30.
t/BioDBSeqFeature............dubious

        Test returned status 2 (wstat 512, 0x200)
Scalar found where operator expected at (eval 152) line 1, near "'int'
$__val"
        (Missing operator before   $__val?)
DIED. FAILED tests 1-43
        Failed 43/43 tests, 0.00% okay
t/BioDBSeqFeature_BDB........Can't locate Bio/DB/SeqFeature/Store.pm in
@INC (@INC contains: /users/golharam/cvswork/bioperl-live/ . ..
./blib/lib t /users/golharam/bioperl/bioperl-live/blib/lib
/users/golharam/bioperl/bioperl-live/blib/arch
/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl) at
t/BioDBSeqFeature.t line 30.
BEGIN failed--compilation aborted at t/BioDBSeqFeature.t line 30.
t/BioDBSeqFeature_BDB........FAILED tests 1-43

        Failed 43/43 tests, 0.00% okay

Any ideas?



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