[Bioperl-l] Bug 1672 - accessing Biosql using OBDA

Brian Osborne osborne1 at optonline.net
Mon Sep 11 17:55:41 EDT 2006


Hilmar,

As mentioned, I¹ve worked on this bug, #1672. You¹d encouraged me to look at
the adaptor modules in BioSQL/ as part of the solution but the module I
wrote and added does not closely resemble the existing adaptors. It
certainly uses some adaptors as well as BioQuery so it¹s very much a
³standard² bioperl-db module. However I was not sure I wanted to call it
something like OBDAAdaptor, instead I¹ve just called it
Bio::DB::BioSQL::OBDA. Tell me if I should rename it or put it in some other
directory, it¹s certainly possible that there are subtleties in these module
names that I¹m failing to appreciate.

Brian O.



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