[Bioperl-l] Aligned Fasta file to Phylip conversion

Brian Osborne osborne1 at optonline.net
Fri Sep 15 17:49:21 EDT 2006


Mike,

Easy!

http://www.bioperl.org/wiki/Bptutorial.pl#III.2.2_Transforming_alignment_fil
es_.28AlignIO.29

Brian O.


On 9/15/06 3:08 PM, "Michael Craige" <mc at michaelcraige.com> wrote:

> Hello all,
> 
> I need to convert some aligned fasta files quickly in my lab to phylip
> format for phylogenetic prediction and analysis.
> 
> My plan is to developed a script(s), but before I make the plunge - does
> anyone know of or have a script(s) that can perform the conversion with or
> with out some tweaking?
> 
> I am also interested in a bio-perl module(s) that can make the process
> faster.
> 
> Thanks
> Mike.
> 
> 
> 
> 
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