[Bioperl-l] DNA sequence assembly for SNP analysis

Fausto Rodríguez Zapata faustov at yahoo.com
Sun Sep 17 09:06:54 EDT 2006


I've found some people that had made po perl scripts for extracting SNPs
from CAP3 ACE assembly files:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=12584131

http://nar.oxfordjournals.org/cgi/content/full/33/suppl_2/W493




--- Thomas J Keller <kellert at ohsu.edu> wrote:

> Greetings,
> What are people using for DNA sequence assembly for SNP analysis  
> these days?
> 
> Thanks,
> Tom K
> 
> 
> Thomas J. Keller, Ph.D.
> Director, MMI Core Facility
> Oregon Health & Science University
> 3181 SW Sam Jackson Park Rd.
> Portland, OR, USA,   97239
> 
> http://www.ohsu.edu/research/core
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 


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