[Bioperl-l] failed install Bioperl on linux

skirov skirov at utk.edu
Mon Sep 18 13:39:34 EDT 2006


>===== Original Message From Chris Fields <cjfields at uiuc.edu> =====
>> Hello, manager,
>
>Why do I feel like I work at MacDonald's?
>
>> I install bioperl from internet by using CPAN or download
>> Bioperl-run-1.5.1.tar.gz into my local pc, however, all these methods
>> falied.
>
>Bioperl == Core package
>
>http://www.bioperl.org/wiki/Core_package
>
>Bioperl != Run package (aka bioperl-run)
>
>http://www.bioperl.org/wiki/Run_package
>
>Very different packages!
>
>> It seems that the seem error occured. How can I deal with it?
>>
>> (1) Local machine, I use 'root' to install
>> RH9 make: Nothing to be done for `Makefile.PL'.
>>

You have run 
make Makefile.PL
which is wrong.

Do (as the docs state)
perl Makefile.PL
make install


as easy as that.

Stefan

>> (2) Network
>> Checking if your kit is complete...
>> Looks good
>> Writing Makefile for Bio
>> make: *** No rule to make target `perl1'.  Stop.
>>   /usr/bin/make perl1 -- NOT OK
>> Running make test
>>   Can't test without successful make
>> Running make install
>>   make had returned bad status, install seems impossible
>>
>> Thanks a lot,
>> Zhuocheng
>
>Sendu covers this one.
>
>Good luck!
>
>Christopher Fields
>Postdoctoral Researcher - Switzer Lab
>Dept. of Biochemistry
>University of Illinois Urbana-Champaign
>
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