[Bioperl-l] Bio::Location::Split question

Hilmar Lapp hlapp at gmx.net
Mon Sep 18 18:26:51 EDT 2006


On Sep 18, 2006, at 5:55 PM, Chris Fields wrote:

> However, if I take the two examples above, run them through
> FTLocationFactory, then use to_FTstring() to get the feature  
> string, this is
> what I get:
>
> complement(join(2691..4571,4918..5163))
>
> complement(join(4918..5163,2691..4571))

So this looks like a bug, right? The correct result would be if both  
yielded the same strings, or syntactically equivalent strings. The  
two above are neither identical nor syntactically equivalent.

Another test is if you set a feature location from either string and  
then request the sub-sequence, the resulting sequence should be  
identical given syntactically equivalent location specifications.

Do you want to file (and possibly address?) this?

	-hilmar
-- 
===========================================================
: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
===========================================================







More information about the Bioperl-l mailing list