[Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die

Sendu Bala bix at sendu.me.uk
Wed Sep 20 16:58:30 EDT 2006


Mauricio Herrera Cuadra wrote:
> Chris Fields wrote:
>> Dave,
>> There is a small bit about what to have in POD in biodesign.pod, which 
>> is no longer in the core.  I think most of it can be found in the wiki under
>> 'Advanced BioPerl'. 
>> http://www.bioperl.org/wiki/Advanced_BioPerl
>>
>> There is a link to the older version of it:
>>
>> http://bioperl.org/Core/Latest/biodesign.html
> 
> Supposedly, this is all what people may need to get started by using a 
> consistent design.

There's also the Bioperl-independent need simply to write valid POD, and 
preferably POD that can be understood by all/many parsers. I used 
maintenance/pod.pl earlier today which shows you all the POD problems. 
The remaining warnings are 'ok'.


>> There is also an Emacs template, which I haven't toyed around with.  I 
>> use ActiveState Komodo, which runs on Mac OS X and WinXP.  Yes, I am 
>> pathetic...
> 
> Komodo is a great IDE (I use it daily)

Agree, and likewise.


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