[Bioperl-l] Unused or incomplete modules in bioperl-live

Chris Fields cjfields at uiuc.edu
Thu Sep 21 20:12:40 EDT 2006


I have a place on the wiki where I have been tracking deprecated and
potentially deprecated modules:

http://www.bioperl.org/wiki/Deprecated_modules

I would say add anything you think may apply there.  Or if you think it's
worth saving, add it to the project priority list, maybe?  

A few more Jason pointed out which we could deprecate (which I haven't added
yet) were Bio::Symbol modules, thought they may still be oof some use to
someone out there willing to take care of them.

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Torsten Seemann
> Sent: Thursday, September 21, 2006 6:52 PM
> To: 'bioperl-l'
> Subject: [Bioperl-l] Unused or incomplete modules in bioperl-live
> 
> Hello all,
> 
> While auditing bioperl-live recently I noticed a module
> Bio/Search/Processor.pm (Aaron Mackey)
> which is unreferenced anywhere else, and it looks like a deployer
> module, but there is no directory
> Bio/Search/Processor/
> 
> The last real CVS entry was
> date: 2000/11/20 17:10:57;  author: jason;  state: Exp;  lines: +10 -11
> "likely meaningless changes as we will probably chuck these modules"
> 
> What's the correct procedure to deal with this?
> Should it be deleted from CVS?
> Or schedule for removal in the 1.6 branch?
> 
> If there are any more modules to be retired etc, should we have a Wiki
> page about it?
> 
> --
> Dr Torsten Seemann               http://www.vicbioinformatics.com
> Victorian Bioinformatics Consortium, Monash University, Australia
> 
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