[Bioperl-l] Package status for 1.5.2

Brian Osborne osborne1 at optonline.net
Sun Sep 24 11:32:40 EDT 2006


Sendu,

Did you test the latest version of bioperl-network? Perhaps part of the
issue is that one doesn't just require Graph, you have to have at least v.
70 of Graph. Let me amend the *t's...

Brian O.


On 9/24/06 8:08 AM, "Sendu Bala" <bix at sendu.me.uk> wrote:

> Network
> -------
> Has no README.
> 
> Test suite has big problems:
> 
> Failed Test            Stat Wstat Total Fail  Failed  List of Failed
> 
------------------------------------------------------------------------------>
-
> t/Graph-Articulation.t    9  2304    47    0   0.00%  ??
> t/Graph-MD5.t             2   512    19    0   0.00%  ??
> t/Graph-Seq.t           255 65280    18    0   0.00%  ??
> t/IO_dip_tab.t            9  2304    16    0   0.00%  ??
> t/IO_psi.t              255 65280    21    0   0.00%  ??
> t/Interaction.t         255 65280    17    0   0.00%  ??
> t/ProteinNet.t            9  2304   168    0   0.00%  ??
> 297 subtests skipped.
> Failed 7/9 test scripts, 22.22% okay. 0/343 subtests failed, 100.00% okay.
> 
> eg.
> t/Graph-Articulation....ok 1/47Can't locate object method
> "get_nodes_by_id" via package "Graph::Undirected" at
> [...]Bio/Network/IO/dip_tab.pm line 141, <GEN1>
> line 1.
> 
> t/Graph-MD5.............Can't locate object method "new" via package
> "Graph::Undirected" (perhaps you forgot to load "Graph::Undirected"?) at
> t/Graph-MD5.t line 44.
> 
> Conclusion: NOT ok to tag, do we even want a unified release with this
> (haven't in the past)?




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