[Bioperl-l] WinXP test results

Nathan S. Haigh n.haigh at sheffield.ac.uk
Mon Sep 25 13:01:27 EDT 2006


Here are test results for Bioperl 1.5.2-c on WinXP Pro SP2. In all 
cases, Perl, Bioperl and only known dependencies (and BerkeleyDB) from 
Makefile.Pl were newly installed.

Running ActivePerl 5.8.8.819:
Failed Test             Stat Wstat Total Fail  Failed  List of Failed
-------------------------------------------------------------------------------
t/BioDBSeqFeature_BDB.t               43   43 100.00%  1-43
t/protgraph.t                         66   24  36.36%  10-13 20-21 26 33 
36-37
                                                       45 48-56 59-60 65-66
5 subtests skipped.
Failed 2/238 test scripts, 99.16% okay. 67/12359 subtests failed, 99.46% 
okay.

The BioDBSeqFeature tests are the same fails already reported by Chris, 
but I also get fails in t/protograph.t. Further details at the bottom of 
this e-mail.


Running ActivePerl 5.6.1:
Trying to get Bioperl installed on ActivePerl 5.6.1 is a total pain 
(which I still failed to do, even after a few days of trying). There are 
several reasons, a few dependencies (and more than a few dependencies of 
Bioperl dependencies) for which there are no PPD's for Perl 5.6 to 
install via PPM. Installing via CPAN, didn't work for me since nmake 
dies with many test suites. Therfore, we should probably recommend 
ActivePerl 5.8 for Windows.


I'll add the test results to http://www.bioperl.org/wiki/Release_1.5.2 
shortly.

Cheers
Nath

C:\bioperl-live>perl -I. -w t/protgraph.t
1..66
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
not ok 11
# Test 11 got: '5' (t/protgraph.t at line 85)
#    Expected: '13'
ok 12
not ok 13
# Test 13 got: '5' (t/protgraph.t at line 94)
#    Expected: '13'
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
not ok 20
# Test 20 got: '0.013' (t/protgraph.t at line 112)
#    Expected: '0.027'
.not ok 21
# Test 21 got: '1' (t/protgraph.t at line 113)
#    Expected: ''
..ok 22
.ok 23
ok 24
..ok 25
.not ok 26
# Test 26 got: '1' (t/protgraph.t at line 121)
#    Expected: '5'
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
not ok 33
# Test 33 got: '139' (t/protgraph.t at line 149)
#    Expected: '71'
ok 34
ok 35
not ok 36
# Test 36 got: '126' (t/protgraph.t at line 157)
#    Expected: '58'
.not ok 37
# Test 37 got: '1' (t/protgraph.t at line 162)
#    Expected: '15'
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
not ok 45
# Failed test 45 in t/protgraph.t at line 186
ok 46
ok 47
not ok 48
# Test 48 got: '75' (t/protgraph.t at line 211)
#    Expected: '72'
not ok 49
# Test 49 got: '343' (t/protgraph.t at line 227)
#    Expected: '72'
not ok 50
# Test 50 got: '368' (t/protgraph.t at line 228)
#    Expected: '74'
not ok 51
# Test 51 got: '344' (t/protgraph.t at line 232)
#    Expected: '73'
not ok 52
# Test 52 got: '368' (t/protgraph.t at line 233)
#    Expected: '74'
not ok 53
# Test 53 got: '432' (t/protgraph.t at line 247)
#    Expected: '72'
not ok 54
# Test 54 got: '461' (t/protgraph.t at line 248)
#    Expected: '74'
not ok 55
# Test 55 got: '434' (t/protgraph.t at line 252)
#    Expected: '74'
not ok 56
# Test 56 got: '463' (t/protgraph.t at line 253)
#    Expected: '76'
ok 57
ok 58
not ok 59
# Test 59 got: '437' (t/protgraph.t at line 262)
#    Expected: '3'
not ok 60
# Test 60 got: '467' (t/protgraph.t at line 263)
#    Expected: '4'
ok 61
ok 62
ok 63
ok 64
not ok 65
# Test 65 got: '440' (t/protgraph.t at line 274)
#    Expected: '3'
not ok 66
# Test 66 got: '472' (t/protgraph.t at line 275)
#    Expected: '5'



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