[Bioperl-l] Bio::Graphics

Lincoln Stein lincoln.stein at gmail.com
Tue Sep 26 09:33:05 EDT 2006


Hi,

I think you're referring to the SYNOPSIS? If so, I found a typo:

These lines:

 $panel->add_track($seq,
>            -glyph  => 'generic',
>            -bgcolor => 'blue',
>            -label  => 1,
>           );



should be replaced with this:

 $panel->add_track($wholeseq,
>            -glyph  => 'generic',
>            -bgcolor => 'blue',
>            -label  => 1,
>           );


This is now fixed in bioperl-live.

Lincoln

On 9/26/06, sergei ryazansky <dr.hogart at gmail.com> wrote:
>
> Hi all,
> I run the example script from perldoc Bio::Graphic as
>         perl image.pl I_factor.gb > image.png
> and obtain the following
>         Can't locate object method "start" via package "Bio::Seq::RichSeq"
> at
> c:/Perl/si
>         te/lib/Bio/Graphics/Feature.pm line 269, <DATA> line 191.
> What does it mean?
> Is it bug or not?
>
> --
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>



-- 
Lincoln D. Stein
Cold Spring Harbor Laboratory
1 Bungtown Road
Cold Spring Harbor, NY 11724
(516) 367-8380 (voice)
(516) 367-8389 (fax)
FOR URGENT MESSAGES & SCHEDULING,
PLEASE CONTACT MY ASSISTANT,
SANDRA MICHELSEN, AT michelse at cshl.edu


More information about the Bioperl-l mailing list