[Bioperl-l] 1.5.2-c WinXP test results

Chris Fields cjfields at uiuc.edu
Tue Sep 26 19:40:45 EDT 2006


Yeah, NCBI just added this database ('toolkit') to EInfo.   Don't know what
it is yet but I think it's related to the NCBI C++ toolkit.

I just added the database to the list and updated it.  I'll stick to running
a comparison on the size of the returned list of dbs vs. a deep comparison.


Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 


> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Sendu Bala
> Sent: Tuesday, September 26, 2006 5:30 PM
> To: Nathan S. Haigh; bioperl-l at bioperl.org
> Subject: Re: [Bioperl-l] 1.5.2-c WinXP test results
> 
> Nathan S. Haigh wrote:
> > I've just run 'perl -I. -w t/EUtilities.t' and get test 46 failing with:
> > not ok 46 - All EInfo databases
> > #   Failed test 'All EInfo databases'
> > #   in t/EUtilities.t at line 259.
> > #     Structures begin differing at:
> > #          $got->[32] = 'toolkit'
> > #     $expected->[32] = 'unigene'
> >
> > This 1.5.2-c is probably a day or two old. Sure I didn't get this
> > previously! - any ideas?
> 
> I presume its getting results from an external server and those results
> have now changed. Nothing to worry about; Chris just needs to adjust the
> expected values (hopefully future-proofing against changes in the future).
> 
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