[Bioperl-l] What is Bio::LiveSeq ?

Chris Fields cjfields at uiuc.edu
Wed Sep 27 10:46:54 EDT 2006


I knew I saw that somewhere; forgot it was in the tutorial.  I did find a
few people using it via the mail list archives.  According to the mail list
(and tutorial, thanks Brian!), it is used mainly for mutagenesis work and
other situations where the sequence may change.  

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 


> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Brian Osborne
> Sent: Wednesday, September 27, 2006 9:08 AM
> To: Torsten Seemann; bioperl-l
> Subject: Re: [Bioperl-l] What is Bio::LiveSeq ?
> 
> Torsten,
> 
> I've never used it but the tutorial has a section on it:
> 
> http://www.bioperl.org/wiki/Bptutorial.pl#III.7.4_Representing_changing_se
> qu
> ences_.28LiveSeq.29
> 
> Brian O.
> 
> 
> On 9/26/06 10:08 PM, "Torsten Seemann"
> <torsten.seemann at infotech.monash.edu.au> wrote:
> 
> >
> > For those who might know:
> >
> > What are the Bio::LiveSeq::* modules for?
> >
> > There isn't much documentation there, I found some hard-coded binary
> > paths, and it only seems to be used by two other modules,
> > Bio/SeqUtils.pm and Bio/Variation/SeqDiff.pm.
> 
> 
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