[Bioperl-l] Test my bioperl 1.5.2-c PPD

Chris Fields cjfields at uiuc.edu
Wed Sep 27 11:37:54 EDT 2006


Nathan,

I managed to install the Bioperl 1.5.2 PPM via the PPM4 GUI.  I think
Bundle::BioPerl also worked but I can't be sure; I already have all of the
modules required.  I'll try a fresh ActivePerl installation to see what
happens, as well as try the command line PPM.

I also noticed the scripts installed as well.  So far, looks good!

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Nathan S. Haigh
> Sent: Wednesday, September 27, 2006 8:59 AM
> To: Sendu Bala; bioperl-l at bioperl.org
> Subject: Re: [Bioperl-l] Test my bioperl 1.5.2-c PPD
> 
> Sendu Bala wrote:
> > Nathan S. Haigh wrote:
> >> Is anyone willing to test out my PPD for Bioperl 1.5.2-c?
> >>
> >> I've temporarily added the required files to my web server and added
> the
> >> redirect workaround (which seems to work perfectly) to my httpd.conf
> >> file. Simply point your PPM4 client to:
> >> http://www.bioinf.shef.ac.uk/bioperl/DIST
> >
> > I don't have a windows machine to hand, and maybe this wouldn't be a
> > problem when using the PPM4 client, but at least pointing a web
> > browser there says:
> >
> > You don't have permission to access /bioperl/DIST/ on this server.
> >
> > Is that healthy?
> It is healthy, because PPM4 will look for packages.xml at that location,
> which it should find. The tags in packages.xml should then point to
> specific locations for all the packages contained in the repository. It
> simply, means that you can't index that directory for simple browsing.
> 
> Nath
> 
> --
> > A: Yes.
> >> Q: Are you sure?
> >>
> >>> A: Because it reverses the logical flow of conversation.
> >>>
> >>>> Q: Why is top posting frowned upon?
> >>>>
> Get Thunderbird <http://www.mozilla.org/products/thunderbird/>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l



More information about the Bioperl-l mailing list