[Bioperl-l] Test my bioperl 1.5.2-c PPD

Chris Fields cjfields at uiuc.edu
Wed Sep 27 11:51:44 EDT 2006


Nathan,

Quick followup.  Looks like everything works with Bundle-BioPerl as well,
using either command line (ppm-shell) or PPM4 GUI.  I manually uninstalled a
few modules via PPM to see it would reinstall them, and it works so far.  I
did notice that it redirected during AcePerl installation from the Bundle,
so I guess you modified your local httpd.conf file.  Also noticed that the
scripts installed in Perl\site\bin as well (which is preferred).  We may
need to update the wiki page to take this into consideration.

So, to sum up, everything looks good so far.  Congrats!  

BTW, I don't know if the installation will work for PPM3(for older
ActivePerl 5.8 installations), but we can always recommend that Windows
users stick with ActivePerl 5.8.819 or later and just see what happens with
PPM3.

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 


> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Nathan S. Haigh
> Sent: Wednesday, September 27, 2006 8:59 AM
> To: Sendu Bala; bioperl-l at bioperl.org
> Subject: Re: [Bioperl-l] Test my bioperl 1.5.2-c PPD
> 
> Sendu Bala wrote:
> > Nathan S. Haigh wrote:
> >> Is anyone willing to test out my PPD for Bioperl 1.5.2-c?
> >>
> >> I've temporarily added the required files to my web server and added
> the
> >> redirect workaround (which seems to work perfectly) to my httpd.conf
> >> file. Simply point your PPM4 client to:
> >> http://www.bioinf.shef.ac.uk/bioperl/DIST
> >
> > I don't have a windows machine to hand, and maybe this wouldn't be a
> > problem when using the PPM4 client, but at least pointing a web
> > browser there says:
> >
> > You don't have permission to access /bioperl/DIST/ on this server.
> >
> > Is that healthy?
> It is healthy, because PPM4 will look for packages.xml at that location,
> which it should find. The tags in packages.xml should then point to
> specific locations for all the packages contained in the repository. It
> simply, means that you can't index that directory for simple browsing.
> 
> Nath
> 
> --
> > A: Yes.
> >> Q: Are you sure?
> >>
> >>> A: Because it reverses the logical flow of conversation.
> >>>
> >>>> Q: Why is top posting frowned upon?
> >>>>
> Get Thunderbird <http://www.mozilla.org/products/thunderbird/>
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