[Bioperl-l] Failing tests, was Re: Simplifications now possible with Perl 5.6.1requirement?

Chris Fields cjfields at uiuc.edu
Thu Sep 28 15:23:07 EDT 2006


I'm getting a few failed tests on Mac OS X:

Failed Test     Stat Wstat Total Fail  List of Failed
------------------------------------------------------------------------ 
-------
t/BPpsilite.t      9  2304    11    6  9-11
t/BioDBGFF.t     255 65280   276  552  1-276
t/BioGraphics.t  255 65280    14   28  1-14
t/CytoMap.t       22  5632   110   14  104-110
5 subtests skipped.
Failed 4/241 test scripts. 300/12479 subtests failed.
Files=241, Tests=12479, 413 wallclock secs (107.53 cusr + 14.85 csys  
= 122.38 CPU)
Failed 4/241 test programs. 300/12479 subtests failed.

This was from a clean checkout.

Chris


On Sep 28, 2006, at 1:51 PM, Heikki Lehvaslaiho wrote:

> On Tuesday 26 September 2006 16:29, Chris Fields wrote:
>>>> open my $FH, '>', $infile
>>>> # instead of
>>>> open FH, ">$infile";
>>>
>>> The latter form has caused at least one bug, so this is worth taking
>>> note of.
>>
>> Agreed.  Localized filehandles cut down on a lot of problems.
>>
>
> I've changed all file handles I could find into lexically scoped  
> ones. In many
> cases the three argument form is used.
>
> 	-Heikki
>
> --
> ______ _/      _/_____________________________________________________
>       _/      _/
>      _/  _/  _/  Heikki Lehvaslaiho    heikki at_sanbi _ac _za
>     _/_/_/_/_/  Associate Professor    skype: heikki_lehvaslaiho
>    _/  _/  _/  SANBI, South African National Bioinformatics Institute
>   _/  _/  _/  University of Western Cape, South Africa
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign





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