[Bioperl-l] Packaging bioperl for Fedora

Chris Fields cjfields at uiuc.edu
Tue Apr 3 10:58:44 EDT 2007


Once these are set up we should add a page to the bioperl wiki to  
describe them in more detail (along with Allen's Biopackages).

chris

On Apr 3, 2007, at 7:28 AM, Stéphane Téletchéa wrote:

> Alex Lancaster a écrit :
>> Hello bioperl,
>>
>> I'm new to the bioperl world, having just started a research position
>> in which I need to manage a large bioperl-based codebase.  To this
>> end, I'm working on packaging bioperl as an official Fedora Package
>> (formerly "Fedora Extras") and I'm currently wading through and
>> packaging the long laundry list of Perl dependencies (then I'm going
>> to try and do the same for biopython).  You can see my some of my
>> progress (including links to the reviews) here:
>>
>> http://fedoraproject.org/wiki/AlexLancaster
>>
>> Several issues have arisen during the packaging that I hope the
>>
>
> Nice, i was on my way to do it :-)
> I'm a Mandriva packager and have been kindly "spushed" for maintaining
> the bioperl package for Mandriva.
>
> You can have a look at the work already done by Mandriva at the  
> addresses:
> http://svn.mandriva.com/cgi-bin/viewvc.cgi/packages/cooker/perl- 
> bioperl/current/
> http://svn.mandriva.com/cgi-bin/viewvc.cgi/packages/cooker/perl- 
> bioperl-run/current/
>
> (Happy users of Mandriva do 'urpmi perl-bioperl, et voilà :-).
>
> Feel free to contact me if you need more input for dependencies, since
> they are quite a lot.
>
> Cheers,
> Stéphane
>
> -- 
> Stéphane Téletchéa, PhD.                  http://www.steletch.org
> Unité Mathématique Informatique et Génome http:// 
> migale.jouy.inra.fr/mig
> INRA, Domaine de Vilvert                  Tél : (33) 134 652 891
> 78352 Jouy-en-Josas cedex, France         Fax : (33) 134 652 901
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign






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