[Bioperl-l] Packaging bioperl for Fedora

Allen Day allenday at gmail.com
Tue Apr 3 13:54:51 EDT 2007


You can link Biopackages now, it's been done for nearly 2 years.

-Allen

On 4/3/07, Chris Fields <cjfields at uiuc.edu> wrote:
> Once these are set up we should add a page to the bioperl wiki to
> describe them in more detail (along with Allen's Biopackages).
>
> chris
>
> On Apr 3, 2007, at 7:28 AM, Stéphane Téletchéa wrote:
>
> > Alex Lancaster a écrit :
> >> Hello bioperl,
> >>
> >> I'm new to the bioperl world, having just started a research position
> >> in which I need to manage a large bioperl-based codebase.  To this
> >> end, I'm working on packaging bioperl as an official Fedora Package
> >> (formerly "Fedora Extras") and I'm currently wading through and
> >> packaging the long laundry list of Perl dependencies (then I'm going
> >> to try and do the same for biopython).  You can see my some of my
> >> progress (including links to the reviews) here:
> >>
> >> http://fedoraproject.org/wiki/AlexLancaster
> >>
> >> Several issues have arisen during the packaging that I hope the
> >>
> >
> > Nice, i was on my way to do it :-)
> > I'm a Mandriva packager and have been kindly "spushed" for maintaining
> > the bioperl package for Mandriva.
> >
> > You can have a look at the work already done by Mandriva at the
> > addresses:
> > http://svn.mandriva.com/cgi-bin/viewvc.cgi/packages/cooker/perl-
> > bioperl/current/
> > http://svn.mandriva.com/cgi-bin/viewvc.cgi/packages/cooker/perl-
> > bioperl-run/current/
> >
> > (Happy users of Mandriva do 'urpmi perl-bioperl, et voilà :-).
> >
> > Feel free to contact me if you need more input for dependencies, since
> > they are quite a lot.
> >
> > Cheers,
> > Stéphane
> >
> > --
> > Stéphane Téletchéa, PhD.                  http://www.steletch.org
> > Unité Mathématique Informatique et Génome http://
> > migale.jouy.inra.fr/mig
> > INRA, Domaine de Vilvert                  Tél : (33) 134 652 891
> > 78352 Jouy-en-Josas cedex, France         Fax : (33) 134 652 901
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
> Christopher Fields
> Postdoctoral Researcher
> Lab of Dr. Robert Switzer
> Dept of Biochemistry
> University of Illinois Urbana-Champaign
>
>
>
>
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>



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