[Bioperl-l] Packaging bioperl for Fedora

Chris Fields cjfields at uiuc.edu
Tue Apr 3 14:11:19 EDT 2007


I added a small piece on Biopackages to the wiki installation page:

http://www.bioperl.org/wiki/Installing_BioPerl

We can move links to RPM (or similar) installations to their own page  
or section in the INSTALL docs when we have time.

chris

On Apr 3, 2007, at 12:54 PM, Allen Day wrote:

> You can link Biopackages now, it's been done for nearly 2 years.
>
> -Allen
>
> On 4/3/07, Chris Fields <cjfields at uiuc.edu> wrote:
>> Once these are set up we should add a page to the bioperl wiki to
>> describe them in more detail (along with Allen's Biopackages).
>>
>> chris
>>
>> On Apr 3, 2007, at 7:28 AM, Stéphane Téletchéa wrote:
>>
>>> Alex Lancaster a écrit :
>>>> Hello bioperl,
>>>>
>>>> I'm new to the bioperl world, having just started a research  
>>>> position
>>>> in which I need to manage a large bioperl-based codebase.  To this
>>>> end, I'm working on packaging bioperl as an official Fedora Package
>>>> (formerly "Fedora Extras") and I'm currently wading through and
>>>> packaging the long laundry list of Perl dependencies (then I'm  
>>>> going
>>>> to try and do the same for biopython).  You can see my some of my
>>>> progress (including links to the reviews) here:
>>>>
>>>> http://fedoraproject.org/wiki/AlexLancaster
>>>>
>>>> Several issues have arisen during the packaging that I hope the
>>>>
>>>
>>> Nice, i was on my way to do it :-)
>>> I'm a Mandriva packager and have been kindly "spushed" for  
>>> maintaining
>>> the bioperl package for Mandriva.
>>>
>>> You can have a look at the work already done by Mandriva at the
>>> addresses:
>>> http://svn.mandriva.com/cgi-bin/viewvc.cgi/packages/cooker/perl-
>>> bioperl/current/
>>> http://svn.mandriva.com/cgi-bin/viewvc.cgi/packages/cooker/perl-
>>> bioperl-run/current/
>>>
>>> (Happy users of Mandriva do 'urpmi perl-bioperl, et voilà :-).
>>>
>>> Feel free to contact me if you need more input for dependencies,  
>>> since
>>> they are quite a lot.
>>>
>>> Cheers,
>>> Stéphane
>>>
>>> --
>>> Stéphane Téletchéa, PhD.                  http://www.steletch.org
>>> Unité Mathématique Informatique et Génome http://
>>> migale.jouy.inra.fr/mig
>>> INRA, Domaine de Vilvert                  Tél : (33) 134 652 891
>>> 78352 Jouy-en-Josas cedex, France         Fax : (33) 134 652 901
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>> Christopher Fields
>> Postdoctoral Researcher
>> Lab of Dr. Robert Switzer
>> Dept of Biochemistry
>> University of Illinois Urbana-Champaign
>>
>>
>>
>>
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign






More information about the Bioperl-l mailing list