[Bioperl-l] Retrieve mRNA from Genome
Kevin.M.Brown at asu.edu
Mon Apr 9 12:19:19 EDT 2007
I believe that is what the spliced_seq method is for
$feat->spliced_seq # the "joined" sequence, when there are
# multiple sub-locations
> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org
> [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of
> Staffa, Nick (NIH/NIEHS)
> Sent: Monday, April 09, 2007 8:43 AM
> To: bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] Retrieve mRNA from Genome
> I have been retrieving sub-sequence from Genbank genomic
> records by use of Bio::SeqIO and ->get_SeqFeatures, ->start
> ->end , but now I'm looking for a quick way to extract CDS or
> mRNA from a multi-segmented annotation, e.g.
> Is there such a method?
> Please point me to appropriate documentation.
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