[Bioperl-l] Thoughts on Bio::Tools::Glimmer
torsten.seemann at infotech.monash.edu.au
Wed Apr 11 20:33:02 EDT 2007
> # Glimmer 3.X prediction
> (/\w+(\d+)\s+ # orf (numeric portion)
> ...isn't picking up more than the last digit in the orf-number. Not
> sure if that's intentional. A sample of the feature output using -
> >gff_string shows up as ...
I think that regexp should be \w+?(\d+)
ie. the \w+ should be non-greedy, otherwise it will swallow up all but
one of the following \d+ (as \d is a subset of \w)
I've CC:ed this to Mark Johnson who made the recent changes to this module.
Thanks for your feedback,
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