[Bioperl-l] How to parse blast result to get 2nd best hit score

Jason Stajich jason at bioperl.org
Sat Apr 14 13:53:42 EDT 2007


Try reading the HOWTO.

http://bioperl.org/wiki/HOWTO:SearchIO

On Apr 13, 2007, at 9:48 AM, gopu_36 wrote:

>
> Can anyone help me to collect the value of the second best hit score
> (ie)raw_score from the blast results which contains multiple  
> queries? I have
> used searchIO object to parse my blast report. I am only interested  
> in the
> second best hit/raw_score and not the first hit!
>
> Thanks in advance!
>
>
> -- 
> View this message in context: http://www.nabble.com/How-to-parse- 
> blast-result-to-get-2nd-best-hit-score-tf3572717.html#a9982570
> Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.
>
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--
Jason Stajich
jason at bioperl.org
http://jason.open-bio.org/


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