[Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl

Wijaya Edward ewijaya at i2r.a-star.edu.sg
Mon Apr 16 11:33:27 EDT 2007


Hi David, 
 
There seems to be no biomart-perl module in CPAN.
 
I tried their cvs:
cvs -d :pserver:cvsuser at cvs.sanger.ac.uk:/cvsroot/biomart login
 
But require password. Can suggest if there is another way to get this module?
 
--
Edward WIJAYA

________________________________

From: David Messina [mailto:dmessina at wustl.edu]
Sent: Mon 4/16/2007 11:21 PM
To: Wijaya Edward
Cc: bioperl-l at lists.open-bio.org
Subject: Re: [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl



I use BioMART for this kind of thing. If you need to do this for more 
than a couple of GO terms, BioMART has a Perl API you can use to 
connect to their data.

http://www.biomart.org/

http://www.biomart.org/install-overview.html

Dave



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