[Bioperl-l] How to Create Sequence and TFBS Graph with Perl

Edward WIJAYA ewijaya at i2r.a-star.edu.sg
Tue Apr 17 09:10:00 EDT 2007


Dear all,

How do you usually construct a graph for TFBS (binding sites) position
within their sequences? I was thinking to build something like this kind of
visualization tool:

http://research.i2r.a-star.edu.sg/Dragon/Motif_Search/cgi-bin/tmp/29740M1.html

or

http://wingless.cs.washington.edu:8080/assessment/servlet?filenameID=submission/SPACE.D9F26D506DE90E9A0A0010BB6BCCAEF3&pageType=visualizationForm&action=Visualize+It

Is there a BioPerl module to do that?

--
Edward



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