[Bioperl-l] DB.t (Bio::DB::Query::GenBank) failures

Sendu Bala bix at sendu.me.uk
Wed Apr 18 12:37:55 EDT 2007


Hi all,

t/DB.t is currently failing tests 40 and 41:

ok $query = Bio::DB::Query::GenBank->new('-db'  => 'nucleotide',
                                          '-ids' => [qw(J00522 AF303112 
2981014)],
                                          -verbose => 1);

cmp_ok $query->count, '>', 0;

You can see that 
http://www.ncbi.nih.gov/entrez/eutils/esearch.fcgi?db=nucleotide&datetype=mdat&usehistory=y&tool=bioperl&term=J00522%2CAF303112%2C2981014&retmax=100 
gives no results, where presumably it used to give 3. querying on the 3 
ids individually works fine. So... what changed and how do we get around it?


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