[Bioperl-l] Getting Gene Sequences with Bioperl

Wijaya Edward ewijaya at i2r.a-star.edu.sg
Sat Apr 21 10:44:08 EDT 2007


Hi all,
 
Is there a BioPerl module that allow us to extract
gene sequence given a list of gene names (gene symbol)?
 
In particular we would pass window size of the sequence,
then returning  upstream, downstream or ORF sequences for that list of genes.
We may also prespecify the on specific organism or all organsims.
 
Is there also a freely downloadable gene database that support
BioPerl module for that task?
 
Thanks and hope to hear from you again.
 
--
Edward WIJAYA
SINGAPORE

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