[Bioperl-l] Parsing FASTA m10 output

Ioannis Kirmitzoglou ioanniskirmitzoglou at gmail.com
Mon Apr 23 05:45:53 EDT 2007


I don't know about older versions but the latest version of FASTA starts its
output with a line similar to those:
# fasta34.exe -m9 -d0 -Q test.faa test.faa OR
# fasta34.exe -m10 -Q test.faa test.faa

This very first line is also the only one in the output that starts with
'#'.
Isn't this an easy way to determine the output type?


-- 

*Ioannis Kirmitzoglou*, MSc
PhD. Student,
Bioinformatics Research Laboratory
Department of Biological Sciences
University of Cyprus


More information about the Bioperl-l mailing list