[Bioperl-l] Warnings/errors generated by Eclipse

Nathan S. Haigh n.haigh at sheffield.ac.uk
Tue Aug 14 03:46:19 EDT 2007


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I've just been setting up Eclipse with the EPIC plugin, and it's
generating some errors and warnings about bioperl-live that I'd like to
pass by you.

I think most of the errors are along the lines of:
"Can't find 'build_params' in _build in
/usr/local/share/perl/5.8.8/Module/Build/Base.pm line 1011"

This occurs with files like:
t/Biblio_biofetch.t
t/seqread_fail.t

I think it's to do with the parameters passed to test_begin() or it
could be my setup of Eclipse?

Other highlighted problems are some of the scripts in the examples dir.
Some require modules that reside in the bioperl-run package. Would it be
wise to move these to the bioperl-run examples dir?

There may also be some problems with XML files in t/data e.g.
t/data/interpro_ebi.xml
There appears to be a typo on line 2. However, I'm not sure this is
up-to-date? I can comment on the others later if required.

Cheers
Nath
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