[Bioperl-l] Homologene parser?

neeti somaiya neetisomaiya at gmail.com
Tue Aug 14 09:24:07 EDT 2007


Hi Andrew,

I think the homologene data files have changed now on the ftp, from what you
had used.
It is now homologene.data and homologene.xml.
I tried using your parser, but because it was written on the file
hmlg.trip.ftp, it doesnt work anymore.

I came across a parser
http://bioinformatics.tgen.org/brunit/software/bioparser/docs/pod_bio_parser_homologene_fileparser_pm.shtml
.
I am looking at it to see if it works for me. NOt sure if it will.

~Neeti.

On 8/14/07, Andrew Macgregor <amacgregor at ccg.murdoch.edu.au> wrote:
>
> On 13/08/2007, at 6:29 PM, neeti somaiya wrote:
>
> > Hi,
> >
> > Does anyone know of any Homologene parser, if available?
> > Please let me know.
> >
> > Thanks and Regards,
> > Neeti.
>
> Hi Neeti,
>
> Quite a long time ago now I wrote an Homologene parser and posted it
> to the mailing list:
>
> <http://www.bioperl.org/pipermail/bioperl-l/2002-February/007288.html>
>
> I don't know if this still works but you could use it as a starting
> point. There may also be something newer out there too, I don't know.
> If you search the mailing list archives you'll get a few messages
> around the topic.
>
> Cheers, Andrew.
>
>
> Andrew Macgregor
> Centre for Comparative Genomics, Murdoch University
> Email: amacgregor at ccg.murdoch.edu.au
> Tel: (08) 9360 2961
>
>
>
>


-- 
-Neeti
Even my blood says, B positive


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