[Bioperl-l] Need assistance with make error

Johnson, Mary (NIH/NCI) [C] johnsonmar at mail.nih.gov
Wed Aug 15 15:01:23 EDT 2007


This is version 1.4.

Mary Johnson

Sr. Network Engineer

National Cancer Institute Center for Bioinformatics
Contractor, TerpSys
http://www.terpsys.com/

 

-----Original Message-----
From: Mauricio Herrera Cuadra [mailto:arareko at campus.iztacala.unam.mx] 
Sent: Wednesday, August 15, 2007 1:46 PM
To: Johnson, Mary (NIH/NCI) [C]
Cc: bioperl-l at bioperl.org
Subject: Re: [Bioperl-l] Need assistance with make error

Which version of bioperl you're trying to install?

Johnson, Mary (NIH/NCI) [C] wrote:
> I'm trying to install bioperl on 2 Linux servers - 1 running Redhat
> Enterprise Linux 4, and the other running RHEL3.  I'm getting the
> following 'make Error 255' when running make test.  I'm not sure what
> this error indicates, and whether I should continue with a force
> install?  Could you please advise.
> 
>  
> 
>  
> 
> Failed Test        Stat Wstat Total Fail  Failed  List of Failed
> 
> ------------------------------------------------------------------------
> -------
> 
> t/BioFetch_DB.t                  27    1   3.70%  8
> 
> t/EMBL_DB.t                      15    3  20.00%  6 13-14
> 
> t/Ontology.t          9  2304    50  100 200.00%  1-50
> 
> t/TreeIO.t                       41    1   2.44%  42
> 
> t/Variation_IO.t                 25    3  12.00%  15 20 25
> 
> t/simpleGOparser.t    9  2304    98  196 200.00%  1-98
> 
> 120 subtests skipped.
> 
> Failed 6/179 test scripts, 96.65% okay. 154/8268 subtests failed, 98.14%
> okay.
> 
> make: *** [test_dynamic] Error 255
> 
>  
> 
>  
> 
>  
> 
> Thanks,
> 
>  
> 
> Mary Johnson
> 
> Sr. Network Engineer
> 
> National Cancer Institute Center for Bioinformatics
> Contractor, TerpSys
> http://www.terpsys.com/ <http://www.terpsys.com/> 
> 
>  
> 
>  
> 
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 

-- 
MAURICIO HERRERA CUADRA
arareko at campus.iztacala.unam.mx
Laboratorio de Genética
Unidad de Morfofisiología y Función
Facultad de Estudios Superiores Iztacala, UNAM



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