[Bioperl-l] Need assistance with make error

Chris Fields cjfields at uiuc.edu
Wed Aug 15 16:25:30 EDT 2007


You'll definitely want to update to the latest (v 1.5.2).  We hope to  
get a new stable release out sometime soon and possibly move to a  
more regular release cycle.

chris

On Aug 15, 2007, at 2:01 PM, Johnson, Mary (NIH/NCI) [C] wrote:

> This is version 1.4.
>
> Mary Johnson
>
> Sr. Network Engineer
>
> National Cancer Institute Center for Bioinformatics
> Contractor, TerpSys
> http://www.terpsys.com/
>
>
>
> -----Original Message-----
> From: Mauricio Herrera Cuadra [mailto:arareko at campus.iztacala.unam.mx]
> Sent: Wednesday, August 15, 2007 1:46 PM
> To: Johnson, Mary (NIH/NCI) [C]
> Cc: bioperl-l at bioperl.org
> Subject: Re: [Bioperl-l] Need assistance with make error
>
> Which version of bioperl you're trying to install?
>
> Johnson, Mary (NIH/NCI) [C] wrote:
>> I'm trying to install bioperl on 2 Linux servers - 1 running Redhat
>> Enterprise Linux 4, and the other running RHEL3.  I'm getting the
>> following 'make Error 255' when running make test.  I'm not sure what
>> this error indicates, and whether I should continue with a force
>> install?  Could you please advise.
>>
>>
>>
>>
>>
>> Failed Test        Stat Wstat Total Fail  Failed  List of Failed
>>
>> --------------------------------------------------------------------- 
>> ---
>> -------
>>
>> t/BioFetch_DB.t                  27    1   3.70%  8
>>
>> t/EMBL_DB.t                      15    3  20.00%  6 13-14
>>
>> t/Ontology.t          9  2304    50  100 200.00%  1-50
>>
>> t/TreeIO.t                       41    1   2.44%  42
>>
>> t/Variation_IO.t                 25    3  12.00%  15 20 25
>>
>> t/simpleGOparser.t    9  2304    98  196 200.00%  1-98
>>
>> 120 subtests skipped.
>>
>> Failed 6/179 test scripts, 96.65% okay. 154/8268 subtests failed,  
>> 98.14%
>> okay.
>>
>> make: *** [test_dynamic] Error 255
>>
>>
>>
>>
>>
>>
>>
>> Thanks,
>>
>>
>>
>> Mary Johnson
>>
>> Sr. Network Engineer
>>
>> National Cancer Institute Center for Bioinformatics
>> Contractor, TerpSys
>> http://www.terpsys.com/ <http://www.terpsys.com/>
>>
>>
>>
>>
>>
>>
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>
> -- 
> MAURICIO HERRERA CUADRA
> arareko at campus.iztacala.unam.mx
> Laboratorio de Genética
> Unidad de Morfofisiología y Función
> Facultad de Estudios Superiores Iztacala, UNAM
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign






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