[Bioperl-l] Need assistance with make error

Chris Fields cjfields at uiuc.edu
Wed Aug 15 16:40:32 EDT 2007


The term 'stable' is relative in this case; tons of bugs fixes were  
incorporated in the 1.5.2 release.  There are a few dev-specific  
issues we'll need to resolve prior to a new release; once those are  
out of the way we'll try to get a new 'stable' out.

chris

On Aug 15, 2007, at 3:32 PM, Johnson, Mary (NIH/NCI) [C] wrote:

> I saw the 1.5.2 version, but it stated that this was a developer  
> release and that 1.4 was the latest stable version, so I went with  
> 1.4.  I'll give 1.5.2 a try.
>
> Thanks,
>
>
> Mary Johnson
>
> Sr. Network Engineer
>
> National Cancer Institute Center for Bioinformatics
> Contractor, TerpSys
> http://www.terpsys.com/
>
>
>
> -----Original Message-----
> From: Chris Fields [mailto:cjfields at uiuc.edu]
> Sent: Wednesday, August 15, 2007 4:26 PM
> To: Johnson, Mary (NIH/NCI) [C]
> Cc: Mauricio Herrera Cuadra; bioperl-l at bioperl.org
> Subject: Re: [Bioperl-l] Need assistance with make error
>
> You'll definitely want to update to the latest (v 1.5.2).  We hope to
> get a new stable release out sometime soon and possibly move to a
> more regular release cycle.
>
> chris
>
> On Aug 15, 2007, at 2:01 PM, Johnson, Mary (NIH/NCI) [C] wrote:
>
>> This is version 1.4.
>>
>> Mary Johnson
>>
>> Sr. Network Engineer
>>
>> National Cancer Institute Center for Bioinformatics
>> Contractor, TerpSys
>> http://www.terpsys.com/
>>
>>
>>
>> -----Original Message-----
>> From: Mauricio Herrera Cuadra  
>> [mailto:arareko at campus.iztacala.unam.mx]
>> Sent: Wednesday, August 15, 2007 1:46 PM
>> To: Johnson, Mary (NIH/NCI) [C]
>> Cc: bioperl-l at bioperl.org
>> Subject: Re: [Bioperl-l] Need assistance with make error
>>
>> Which version of bioperl you're trying to install?
>>
>> Johnson, Mary (NIH/NCI) [C] wrote:
>>> I'm trying to install bioperl on 2 Linux servers - 1 running Redhat
>>> Enterprise Linux 4, and the other running RHEL3.  I'm getting the
>>> following 'make Error 255' when running make test.  I'm not sure  
>>> what
>>> this error indicates, and whether I should continue with a force
>>> install?  Could you please advise.
>>>
>>>
>>>
>>>
>>>
>>> Failed Test        Stat Wstat Total Fail  Failed  List of Failed
>>>
>>> -------------------------------------------------------------------- 
>>> -
>>> ---
>>> -------
>>>
>>> t/BioFetch_DB.t                  27    1   3.70%  8
>>>
>>> t/EMBL_DB.t                      15    3  20.00%  6 13-14
>>>
>>> t/Ontology.t          9  2304    50  100 200.00%  1-50
>>>
>>> t/TreeIO.t                       41    1   2.44%  42
>>>
>>> t/Variation_IO.t                 25    3  12.00%  15 20 25
>>>
>>> t/simpleGOparser.t    9  2304    98  196 200.00%  1-98
>>>
>>> 120 subtests skipped.
>>>
>>> Failed 6/179 test scripts, 96.65% okay. 154/8268 subtests failed,
>>> 98.14%
>>> okay.
>>>
>>> make: *** [test_dynamic] Error 255
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> Thanks,
>>>
>>>
>>>
>>> Mary Johnson
>>>
>>> Sr. Network Engineer
>>>
>>> National Cancer Institute Center for Bioinformatics
>>> Contractor, TerpSys
>>> http://www.terpsys.com/ <http://www.terpsys.com/>
>>>
>>>
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>>
>>
>> -- 
>> MAURICIO HERRERA CUADRA
>> arareko at campus.iztacala.unam.mx
>> Laboratorio de Genética
>> Unidad de Morfofisiología y Función
>> Facultad de Estudios Superiores Iztacala, UNAM
>>
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
> Christopher Fields
> Postdoctoral Researcher
> Lab of Dr. Robert Switzer
> Dept of Biochemistry
> University of Illinois Urbana-Champaign
>
>

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign






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