[Bioperl-l] Need assistance with make error

Kevin Brown Kevin.M.Brown at asu.edu
Wed Aug 15 16:54:04 EDT 2007


It technically is a developer release, but given the age of the 1.4 release it is better because of fixes for things like doing webblasts and other improvements and I've found that it is reliable in the results that come out of the various objects that I've had to use in my current projects.

> I saw the 1.5.2 version, but it stated that this was a 
> developer release and that 1.4 was the latest stable version, 
> so I went with 1.4.  I'll give 1.5.2 a try.
> 
> Thanks,
> 
> 
> Mary Johnson
> 
> Sr. Network Engineer
> 
> National Cancer Institute Center for Bioinformatics 
> Contractor, TerpSys http://www.terpsys.com/
> 
>  
> 
> -----Original Message-----
> From: Chris Fields [mailto:cjfields at uiuc.edu]
> Sent: Wednesday, August 15, 2007 4:26 PM
> To: Johnson, Mary (NIH/NCI) [C]
> Cc: Mauricio Herrera Cuadra; bioperl-l at bioperl.org
> Subject: Re: [Bioperl-l] Need assistance with make error
> 
> You'll definitely want to update to the latest (v 1.5.2).  We 
> hope to get a new stable release out sometime soon and 
> possibly move to a more regular release cycle.
> 
> chris
> 
> On Aug 15, 2007, at 2:01 PM, Johnson, Mary (NIH/NCI) [C] wrote:
> 
> > This is version 1.4.
> >
> > Mary Johnson
> >
> > Sr. Network Engineer
> >
> > National Cancer Institute Center for Bioinformatics Contractor, 
> > TerpSys http://www.terpsys.com/
> >
> >
> >
> > -----Original Message-----
> > From: Mauricio Herrera Cuadra 
> [mailto:arareko at campus.iztacala.unam.mx]
> > Sent: Wednesday, August 15, 2007 1:46 PM
> > To: Johnson, Mary (NIH/NCI) [C]
> > Cc: bioperl-l at bioperl.org
> > Subject: Re: [Bioperl-l] Need assistance with make error
> >
> > Which version of bioperl you're trying to install?
> >
> > Johnson, Mary (NIH/NCI) [C] wrote:
> >> I'm trying to install bioperl on 2 Linux servers - 1 
> running Redhat 
> >> Enterprise Linux 4, and the other running RHEL3.  I'm getting the 
> >> following 'make Error 255' when running make test.  I'm 
> not sure what 
> >> this error indicates, and whether I should continue with a force 
> >> install?  Could you please advise.
> >>
> >>
> >>
> >>
> >>
> >> Failed Test        Stat Wstat Total Fail  Failed  List of Failed
> >>
> >> 
> ---------------------------------------------------------------------
> >> ---
> >> -------
> >>
> >> t/BioFetch_DB.t                  27    1   3.70%  8
> >>
> >> t/EMBL_DB.t                      15    3  20.00%  6 13-14
> >>
> >> t/Ontology.t          9  2304    50  100 200.00%  1-50
> >>
> >> t/TreeIO.t                       41    1   2.44%  42
> >>
> >> t/Variation_IO.t                 25    3  12.00%  15 20 25
> >>
> >> t/simpleGOparser.t    9  2304    98  196 200.00%  1-98
> >>
> >> 120 subtests skipped.
> >>
> >> Failed 6/179 test scripts, 96.65% okay. 154/8268 subtests failed, 
> >> 98.14% okay.
> >>
> >> make: *** [test_dynamic] Error 255
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >> Thanks,
> >>
> >>
> >>
> >> Mary Johnson
> >>
> >> Sr. Network Engineer
> >>
> >> National Cancer Institute Center for Bioinformatics Contractor, 
> >> TerpSys http://www.terpsys.com/ <http://www.terpsys.com/>
> >>
> >>
> >>
> >>
> >>
> >>
> >> _______________________________________________
> >> Bioperl-l mailing list
> >> Bioperl-l at lists.open-bio.org
> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l
> >>
> >
> > --
> > MAURICIO HERRERA CUADRA
> > arareko at campus.iztacala.unam.mx
> > Laboratorio de Genética
> > Unidad de Morfofisiología y Función
> > Facultad de Estudios Superiores Iztacala, UNAM
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 
> Christopher Fields
> Postdoctoral Researcher
> Lab of Dr. Robert Switzer
> Dept of Biochemistry
> University of Illinois Urbana-Champaign
> 
> 
> 
> _______________________________________________
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> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 



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